Distance from surface specified: 1.80 There are 32 ligand heavy atoms Ligand center of coords (x y z): -0.140125 24.3759375 67.62375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12914 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10666 WARNING: removing a crystallographic sphere that is distance 1.98225578571485 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10424 Number of spheres polar: 5474, nonpolar: 3607, out of current total: 10424 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.10740 13.84880 11.86260 38.37340 53.62720 81.58260 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1438 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 873 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 863 Spheres center of coords (x y z): 0.153777752027809 22.9864579374275 67.3230324449594 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.2021762855905 Final number of output spheres is: 200 Number of polar spheres: 105 Number of nonpolar spheres: 90 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 31