usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -16.71425 87.7746875 0.6760625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1086 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 674 Number of spheres polar: 191, nonpolar: 343, out of current total: 674 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -26.69523 -6.74158 78.75758 97.73335 -9.04600 10.58761 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 226 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 183 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 149 Spheres center of coords (x y z): -16.0847112080537 90.9770126845637 3.1424066442953 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.14809660001478 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 16