usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 53.6514736842105 129.300527368421 55.1293684210526
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1127
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 714
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 714
Number of spheres polar: 277, nonpolar: 315, out of current total: 714
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 43.66674 63.65120 119.48274 139.29306 45.30422 65.11443
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 225
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 184
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 145
Spheres center of coords (x y z): 53.5792211724138 131.898817103448 57.8158869655173
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.30998019696719
Final number of output spheres is: 45
Number of polar spheres: 24
Number of nonpolar spheres: 18
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 19