usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 53.0402 127.7982005 54.8202
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1170
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 736
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 735
Number of spheres polar: 294, nonpolar: 334, out of current total: 735
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 43.07261 63.03981 119.56019 137.76910 45.11087 64.80740
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 232
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 192
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 160
Spheres center of coords (x y z): 53.0939215 130.9897973125 56.8533230625
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.82115843802038
Final number of output spheres is: 45
Number of polar spheres: 29
Number of nonpolar spheres: 14
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 20