usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 54.0991578947368 129.458366842105 55.9842631578947
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1191
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 741
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 741
Number of spheres polar: 305, nonpolar: 316, out of current total: 741
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 44.27811 64.09496 119.93659 139.43532 47.20765 65.97350
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 206
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 174
Spheres center of coords (x y z): 53.9579113218391 133.433727068965 56.7919093678161
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.16712496737694
Final number of output spheres is: 45
Number of polar spheres: 23
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 19