usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 2.51126315789474 18.5228947368421 25.8831578947368 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1438 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 769 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 766 Number of spheres polar: 269, nonpolar: 330, out of current total: 766 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.46652 10.48227 8.53786 28.44869 15.90036 35.75808 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 406 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 294 Spheres center of coords (x y z): 1.4784774829932 20.8252519387755 23.1729290816327 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.77376908596744 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 19