usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.3195263157895 11.3660526315789 58.5542631578947 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1313 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 699 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 699 Number of spheres polar: 281, nonpolar: 272, out of current total: 699 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.44861 24.31029 1.37116 21.32152 48.56290 68.50244 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 241 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 144 Spheres center of coords (x y z): 16.533726875 11.35416375 60.8354765972222 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.5193387402474 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 19