usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.3078421052632 11.3026315789474 58.5739473684211 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1406 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 758 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 751 Number of spheres polar: 297, nonpolar: 295, out of current total: 751 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.55932 24.27734 1.30336 21.26068 48.57727 68.57285 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 424 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): 16.7886904580153 10.8215357633588 60.3870475190839 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.30006128420785 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 19