usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.3982631578947 11.5726315789474 57.0982105263158 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1414 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 838 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 834 Number of spheres polar: 346, nonpolar: 375, out of current total: 834 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.78368 24.38161 1.58137 21.53448 47.19493 67.09768 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 416 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): 16.2982915564202 11.4302611673152 59.7321128404669 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.96423065963521 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 19