usefragsph not on
There are 12 ligand heavy atoms
Ligand center of coords (x y z): 53.6109166666666 47.7114166666667 26.0213333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1128
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 717
Number of spheres polar: 221, nonpolar: 403, out of current total: 717
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 43.64156 63.60841 38.22094 57.64127 16.08244 36.00341
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 394
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 323
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 221
Spheres center of coords (x y z): 53.1267434389141 49.4955638914027 28.724945520362
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.40267119406798
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 12