usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -19.2586315789474 0.817052631578947 -43.4198421052632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1514 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 953 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 953 Number of spheres polar: 363, nonpolar: 447, out of current total: 953 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -29.22289 -9.27352 -9.18016 10.31262 -52.66974 -33.45390 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 304 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 228 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 179 Spheres center of coords (x y z): -18.943640726257 -2.62548083798883 -42.1329524022346 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.95462462062859 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 19