usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 14.5510588235294 11.1464117647059 58.1124117647059 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1448 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 825 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 825 Number of spheres polar: 347, nonpolar: 350, out of current total: 825 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.67402 24.53206 1.24208 20.94679 48.73044 68.10297 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 415 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 363 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 272 Spheres center of coords (x y z): 16.7226952205882 11.25198625 60.8218016544118 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.32122271749786 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 17