usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 24.8538 91.2606 73.6377 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1145 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 742 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 740 Number of spheres polar: 229, nonpolar: 375, out of current total: 740 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.87134 34.78308 81.29295 101.16113 66.01865 83.62242 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 110 Spheres center of coords (x y z): 19.6964853636364 91.0591487272728 77.8511313636364 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.86939286630918 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 10