usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 18.9215714285714 89.6689285714286 75.1229285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 843 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 441 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 441 Number of spheres polar: 203, nonpolar: 173, out of current total: 441 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.93962 28.90192 80.00420 99.52644 70.44422 85.03817 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 156 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 116 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 76 Spheres center of coords (x y z): 21.72711 89.0930335526316 77.2640888157894 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.77592590565452 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 14