usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -65.394 91.1769 94.1369 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1223 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 630 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 630 Number of spheres polar: 271, nonpolar: 285, out of current total: 630 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -75.39001 -55.42391 81.37878 101.17298 85.14000 104.03657 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 327 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 282 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 214 Spheres center of coords (x y z): -66.3375985514019 94.0985763551402 97.2393513084112 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.89532479393057 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 20