usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 42.3663 61.41995 170.4572995
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1340
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 901
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 901
Number of spheres polar: 308, nonpolar: 433, out of current total: 901
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.45021 51.66313 51.52837 71.41679 160.75999 180.44154
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 450
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 381
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 344
Spheres center of coords (x y z): 38.3990631395349 61.3101818604651 171.819795
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.86249795494486
Final number of output spheres is: 60
Number of polar spheres: 26
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 20