usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 73.5792272727273 45.0840454545455 50.0545454545455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 911 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 594 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 594 Number of spheres polar: 182, nonpolar: 282, out of current total: 594 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 63.69648 83.55359 35.57039 55.06623 40.50176 59.56367 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 218 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 168 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 118 Spheres center of coords (x y z): 72.6995111864406 45.2794366949152 53.0762227966102 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11174297220762 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22