usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 73.4531 48.2236 49.996 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1156 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 784 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 784 Number of spheres polar: 334, nonpolar: 369, out of current total: 784 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 63.54694 83.43962 38.29496 58.21091 41.86385 59.94574 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 431 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 308 Spheres center of coords (x y z): 75.0639368831169 49.1775348051948 53.1148463311689 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.25156957254926 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 10