usefragsph not on There are 12 ligand heavy atoms Ligand center of coords (x y z): 26.2938333333333 71.4005 43.821 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1030 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 799 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 789 Number of spheres polar: 254, nonpolar: 338, out of current total: 789 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.52272 35.24466 61.42115 81.39257 33.86825 53.76152 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 175 Spheres center of coords (x y z): 29.9566682857143 70.8812251428572 46.0315496 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.7812080878436 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 12