usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 32.0041818181818 -12.3730909090909 24.6380909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1034 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 687 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 681 Number of spheres polar: 283, nonpolar: 305, out of current total: 681 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.20068 41.98584 -21.30314 -2.40104 14.97706 34.45230 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 335 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 273 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): 35.594878647541 -12.4989214754098 23.4894403688525 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.87115604160439 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 11