Creating binding-site residue list Creating molecular surface real 0m1.670s user 0m0.303s sys 0m0.124s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0:1344 spheres. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 116. 121. 122. 122. 122. 122. 122. 123. 125. 125. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 126. 127. 127. 127. 127. 127. 127. 127. 127. 127. 127. 127. 128. 128. 128. 128. 128. 128. 128. 128. 128. 128. 128. 128. 128. 129. 129. 129. 130. 130. 132. 132. 132. 455. 458. 458. 458. 458. 459. 459. 459. 459. 459. 459. 459. 459. 459. 459. 459. 459. 459. 459. 460. 460. 460. 460. 460. 461. 466. 469. 469. 469. 469. 469. 469. 469. 469. 469. 469. 469. 469. 469. 469. 469. 472. 472. 473. 473. 474. 474. 474. 474. 474. 474. 474. 474. 474. 474. 474. 478. 478. 478. 478. 478. 478. 478. 484. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 485. 486. 486. 486. 486. 486. 486. 486. 487. 487. 487. 490. 490. 490. 490. 490. 490. 492. 494. 494. 494. 494. 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STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 45 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.9034.9035.9036.9037.9038.9039.9040.9041.9042.9043.9044.9045.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 22m5.840s user 21m55.621s sys 0m0.062s Heavy solvent excluded grid being made FORTRAN STOP real 33m26.136s user 30m53.026s sys 0m0.081s