usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.7145789473684 11.2302105263158 57.6372105263158 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1346 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 685 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 685 Number of spheres polar: 247, nonpolar: 322, out of current total: 685 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.89442 24.60830 1.25931 21.15119 47.72700 67.62782 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 388 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 330 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 245 Spheres center of coords (x y z): 16.6580160816326 9.99840502040817 60.084953632653 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.80515035811115 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 19