Distance from surface specified: 1.80 There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.7145789473684 11.2302105263158 57.6372105263158 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12655 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11569 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11241 Number of spheres polar: 6639, nonpolar: 3726, out of current total: 11241 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.73640 28.69800 -2.75300 24.94720 43.65840 71.63160 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1403 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 797 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 781 Spheres center of coords (x y z): 18.779009475032 8.54051984635084 58.6277065300896 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.3645000997842 Final number of output spheres is: 200 Number of polar spheres: 138 Number of nonpolar spheres: 50 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 19