DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-3-08.c.bkslab.org 10-Apr-12 19:33:25 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1721216 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -4.165001 -5.535000 37.13700 grid max 34.33500 30.96500 78.63700 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 37 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 11.49160 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 DIH_301_3 5001 1536988 19 90 1939.6 3.26 E DIH_301_3 2 -18.91 -28.10 9.00 0.93 -37.07 2 DIH_301_3 3143 1493899 19 270 1922.6 2.65 E DIH_301_3 4 -18.50 -28.28 8.97 0.93 -36.89 3 DIH_301_3 5001 1536536 19 108 2232.6 3.24 E DIH_301_3 2 -20.20 -27.83 9.17 1.16 -37.70 4 DIH_301_3 5198 2555788 19 540 3195.6 4.56 E DIH_301_3 4 -20.06 -27.55 9.18 1.20 -37.23 5 DIH_301_3 5001 1476130 19 99 2165.0 3.10 E DIH_301_3 2 -17.46 -28.19 8.99 0.96 -35.71 6 DIH_301_3 6046 2726426 19 297 1860.2 4.91 E DIH_301_3 4 -18.51 -28.17 8.99 0.93 -36.77 7 DIH_301_3 5001 1322094 19 72 2078.5 2.82 E DIH_301_3 2 -18.25 -27.93 9.14 1.11 -35.93 8 DIH_301_3 6548 2694400 19 144 2625.4 4.82 E DIH_301_3 4 -19.54 -28.70 9.22 1.28 -37.75 9 DIH_301_3 5001 1673975 19 99 2080.7 3.60 E DIH_301_3 2 -18.01 -27.26 24.05 0.41 -20.81 10 DIH_301_3 2510 1349669 19 297 1712.2 2.47 E DIH_301_3 4 -16.08 -27.92 23.23 0.25 -20.52 11 DIH_301_3 5001 1547892 19 99 2298.9 3.42 E DIH_301_3 2 -17.68 -25.79 22.93 0.47 -20.08 12 DIH_301_3 4447 2352597 19 396 2565.0 4.26 E DIH_301_3 4 -19.48 -25.41 24.78 0.68 -19.43 13 DIH_301_3 5001 1571139 19 99 2166.9 3.45 E DIH_301_3 2 -16.08 -28.13 22.37 0.49 -21.36 14 DIH_301_3 4491 2336948 19 396 1289.4 4.31 E DIH_301_3 4 -19.40 -27.06 24.08 0.41 -21.97 15 DIH_301_3 5001 1380624 19 72 1277.8 2.98 E DIH_301_3 2 -19.18 -26.80 23.73 0.61 -21.64 16 DIH_301_3 5247 2223119 19 144 2092.7 4.08 E DIH_301_3 4 -15.75 -28.50 23.90 0.55 -19.79 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 2781583 for debugging, time = 59.54000 solvation corrected scores: (a) 1 DIH_301_3 score: -37.746 nathvy = 19 nconfs = 144 2 DIH_301_3 score: -37.703 nathvy = 19 nconfs = 108 3 DIH_301_3 score: -37.226 nathvy = 19 nconfs = 540 4 DIH_301_3 score: -37.073 nathvy = 19 nconfs = 90 5 DIH_301_3 score: -36.885 nathvy = 19 nconfs = 270 6 DIH_301_3 score: -36.766 nathvy = 19 nconfs = 297 7 DIH_301_3 score: -35.930 nathvy = 19 nconfs = 72 8 DIH_301_3 score: -35.708 nathvy = 19 nconfs = 99 9 DIH_301_3 score: -21.969 nathvy = 19 nconfs = 396 10 DIH_301_3 score: -21.636 nathvy = 19 nconfs = 72 11 DIH_301_3 score: -21.355 nathvy = 19 nconfs = 99 12 DIH_301_3 score: -20.808 nathvy = 19 nconfs = 99 13 DIH_301_3 score: -20.517 nathvy = 19 nconfs = 297 14 DIH_301_3 score: -20.076 nathvy = 19 nconfs = 99 15 DIH_301_3 score: -19.792 nathvy = 19 nconfs = 144 16 DIH_301_3 score: -19.427 nathvy = 19 nconfs = 396 Date and Time: 10-Apr-12 19:35:05 elapsed time (sec): 59.5500