usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -17.6452105263158 -14.4179210526316 -5.40652631578947 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2331 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1102 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1102 Number of spheres polar: 234, nonpolar: 780, out of current total: 1102 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -25.68890 -7.69522 -24.41169 -4.43725 -14.03373 4.58142 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 336 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 239 Spheres center of coords (x y z): -13.52214 -14.4071910041841 -4.42445058577406 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.12833346797252 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 38