usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 76.3225333333333 27.9830444444444 23.9524888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 3058 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1510 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1510 Number of spheres polar: 306, nonpolar: 1011, out of current total: 1510 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 66.34251 85.52239 17.98565 37.94354 13.98586 33.94545 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 426 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 347 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 74.4241626470588 26.3375056176471 24.8972227058824 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89428514267176 Final number of output spheres is: 45 Number of polar spheres: 3 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 45