Distance from surface specified: 1.80 There are 33 ligand heavy atoms Ligand center of coords (x y z): 13.7566363636364 39.4499090909091 28.012303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 22025 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 14549 WARNING: removing a crystallographic sphere that is distance 1.49041403643418 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 14234 Number of spheres polar: 6906, nonpolar: 6273, out of current total: 14234 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.24240 27.75520 25.51260 53.44680 14.01300 42.00400 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1699 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 790 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 626 Spheres center of coords (x y z): 20.4480313099041 39.702407028754 26.6493095846645 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.0889869735323 Final number of output spheres is: 200 Number of polar spheres: 89 Number of nonpolar spheres: 108 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32