There are 33 ligand heavy atoms Ligand center of coords (x y z): 13.7566363636364 39.4499090909091 28.012303030303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 22025 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 11175 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 11175 Number of spheres polar: 5355, nonpolar: 4996, out of current total: 11175 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.76080 25.75280 27.46460 51.44940 16.01400 40.01120 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1325 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 550 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 510 Spheres center of coords (x y z): 19.3300768627451 40.0005427450981 26.4375203921569 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.83513459777629 Final number of output spheres is: 120 Number of polar spheres: 49 Number of nonpolar spheres: 70 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33