usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -28.4997631578947 15.9176052631579 6.29707894736842 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2460 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1176 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1176 Number of spheres polar: 229, nonpolar: 834, out of current total: 1176 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -38.31856 -18.53025 6.80300 25.91272 -3.67744 16.23000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): -27.2672749236641 18.8480091221374 8.54004003816793 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.00123847196647 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 38