usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 10.9452162162162 4.70156756756757 -7.70708108108108 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2283 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 979 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 979 Number of spheres polar: 210, nonpolar: 671, out of current total: 979 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.01083 20.93489 -5.18613 14.68417 -17.70068 2.22587 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 472 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 404 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 391 Spheres center of coords (x y z): 9.62893690537084 6.83361373401535 -5.87561368286445 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.14083665592934 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37