usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 33.1768378378378 46.539054054054 18.2082972972973 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2074 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1031 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1031 Number of spheres polar: 247, nonpolar: 728, out of current total: 1031 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.26654 43.16594 36.76088 56.47361 8.21760 27.99350 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 262 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 220 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 191 Spheres center of coords (x y z): 36.5220160732984 46.3463279057591 17.2649726701571 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.58639121235977 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37