usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 33.1768378378378 46.539054054054 18.2082972972973 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2074 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1031 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1031 Number of spheres polar: 247, nonpolar: 728, out of current total: 1031 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.26654 43.16594 36.76088 56.47361 8.21760 27.99350 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 405 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 365 Spheres center of coords (x y z): 36.5537741643835 46.4986844109589 17.3303764931507 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.40757246064206 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37