usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): -1.47791428571429 -0.6028 11.4181142857143
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2212
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1036
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1032
Number of spheres polar: 328, nonpolar: 611, out of current total: 1032
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.47115 8.51434 -10.58069 9.31777 1.42079 21.41369
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 510
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 430
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 358
Spheres center of coords (x y z): 1.89244905027933 -1.14575407821229 11.1101649441341
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.6495445927398
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 35