usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 14.8672666666667 1.77953333333333 38.4291333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1781 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 810 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 810 Number of spheres polar: 157, nonpolar: 576, out of current total: 810 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.87331 24.83552 -8.20178 11.69619 29.28987 48.42385 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 242 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 179 Spheres center of coords (x y z): 11.0057401117318 0.191557206703911 37.6768516201117 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78358959093055 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 30