usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 33.0802068965517 6.47962068965517 58.3164137931035 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1742 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 816 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 816 Number of spheres polar: 183, nonpolar: 562, out of current total: 816 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.08228 43.07841 -3.45080 16.45994 49.20832 68.31454 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 395 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 349 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 299 Spheres center of coords (x y z): 29.636218361204 7.16957618729097 57.4775792976589 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.71181055042327 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29