usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 34.0198888888889 8.70096296296296 59.7657777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1822 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 851 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 851 Number of spheres polar: 241, nonpolar: 552, out of current total: 851 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.03840 44.01335 -1.11468 18.66884 49.77933 69.72868 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 232 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 160 Spheres center of coords (x y z): 30.650786125 9.9081658125 57.329228375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6265284310254 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 27