usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 34.4742222222222 70.6075 -2.60669444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2137 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 884 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 884 Number of spheres polar: 252, nonpolar: 577, out of current total: 884 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.50397 44.44165 60.67440 80.58807 -12.59030 7.31931 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 424 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 350 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 318 Spheres center of coords (x y z): 33.6887703459119 72.1533535534591 0.155061383647799 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.1996014106351 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 36