usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 12.0955365853659 -6.69687804878049 9.07365853658536
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2847
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1186
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1184
Number of spheres polar: 278, nonpolar: 816, out of current total: 1184
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.21548 22.08512 -16.69200 3.30164 -0.92581 19.03675
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 569
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 480
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 388
Spheres center of coords (x y z): 11.8855880670103 -4.29150476804124 6.48560644329897
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.54571226610565
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 41