usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 17.0292258064516 63.4348709677419 13.4589032258065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2332 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1139 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1139 Number of spheres polar: 228, nonpolar: 803, out of current total: 1139 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.03447 27.02220 53.50890 73.38303 3.59476 23.45059 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 547 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 465 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 406 Spheres center of coords (x y z): 15.1813198768473 63.9052007881773 11.8299012315271 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.39799699647713 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 31