usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 19.9202580645161 7.11922580645161 15.4763548387097 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2068 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 814 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 814 Number of spheres polar: 171, nonpolar: 570, out of current total: 814 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.92916 29.90716 -2.78923 17.07866 5.53972 25.47116 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 378 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 321 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 277 Spheres center of coords (x y z): 17.3566780866426 7.21597176895307 12.8353802527076 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.56208888457078 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 31