usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 9.23582051282051 -5.89446153846154 39.0906153846154
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2988
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1102
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1102
Number of spheres polar: 179, nonpolar: 814, out of current total: 1102
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.76059 19.07621 -15.86336 4.05198 29.46647 49.08807
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 536
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 468
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 422
Spheres center of coords (x y z): 5.91158362559242 -4.12228561611374 39.3871399526066
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.11868356959959
Final number of output spheres is: 60
Number of polar spheres: 6
Number of nonpolar spheres: 53
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 39