usefragsph not on There are 40 ligand heavy atoms Ligand center of coords (x y z): 22.224425 -10.869575 3.6167 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2493 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1263 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1262 Number of spheres polar: 308, nonpolar: 788, out of current total: 1262 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.23131 32.20428 -20.71263 -0.87253 -6.34930 13.59172 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 347 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 295 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 285 Spheres center of coords (x y z): 22.0472220350877 -9.7988945263158 3.22079529824561 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99984651152288 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 40