usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 16.8408787878788 16.6438787878788 15.0886060606061 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2652 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1112 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1112 Number of spheres polar: 267, nonpolar: 734, out of current total: 1112 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.85547 26.81843 7.00098 26.61724 5.14371 24.99000 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 545 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 454 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 388 Spheres center of coords (x y z): 15.4523400257732 18.5265371907216 12.3849698969072 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85706035792672 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33