usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 14.758775 5.656825 12.6282
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1822
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1060
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1060
Number of spheres polar: 308, nonpolar: 602, out of current total: 1060
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.83402 24.68341 -3.93690 15.64714 2.64739 22.36242
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 508
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 454
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 449
Spheres center of coords (x y z): 13.4393359020044 7.99310236080178 12.4628131848552
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.13943993394459
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 42
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 40