usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 18.7094761904762 17.6919047619048 14.100380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2005 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 905 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 905 Number of spheres polar: 246, nonpolar: 553, out of current total: 905 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.72641 28.67765 7.79517 27.67222 4.18058 24.07992 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 245 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 206 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 15.5083751075269 19.8636453225807 11.9482161827957 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.67139567273693 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 21