usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 15.5429523809524 18.482619047619 10.1499047619048 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1697 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 995 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 995 Number of spheres polar: 230, nonpolar: 617, out of current total: 995 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.54474 25.53650 8.50868 28.46872 0.46912 20.13423 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 530 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 439 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 402 Spheres center of coords (x y z): 14.9098137562189 19.3373114427861 11.5750171144278 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89612006360949 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 21