usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 18.0174347826087 18.7702173913043 13.5653043478261 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1972 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1092 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1092 Number of spheres polar: 283, nonpolar: 675, out of current total: 1092 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.01935 27.92791 9.13519 28.68233 3.63014 23.53997 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 298 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 230 Spheres center of coords (x y z): 14.3536468695652 20.9789339565218 11.8612576956522 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.15770730190383 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 23