usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 16.0267391304348 63.2280869565217 14.9930434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1960 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1001 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1001 Number of spheres polar: 238, nonpolar: 630, out of current total: 1001 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.09267 25.99733 54.40600 73.22665 5.03126 24.95128 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 261 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): 14.96098575 65.2036755 12.6232421 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64311189645532 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 23