usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 16.0267391304348 63.2280869565217 14.9930434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1960 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1001 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1001 Number of spheres polar: 238, nonpolar: 630, out of current total: 1001 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.09267 25.99733 54.40600 73.22665 5.03126 24.95128 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 483 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 403 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 376 Spheres center of coords (x y z): 15.2752880319149 65.1803252925532 13.029566356383 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48199331192472 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 23