usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 18.5299285714286 64.0343571428571 16.2954285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1270 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 852 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 852 Number of spheres polar: 244, nonpolar: 488, out of current total: 852 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.53764 28.47555 54.44448 73.94363 6.95621 26.28709 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 187 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 121 Spheres center of coords (x y z): 15.1161921487603 64.7266485123967 11.9600963636364 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.50638129332723 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 14